Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 3
Release date: May 10 2011
Last update date: Jun 11 2013
Access: Public
Taxon: Zea mays
Dataset link High-throughput sequencing of small RNAs in Cycas rumphii

Experimental Protocol


Small RNA libraries were derived from leaves, ovules and microsporangia of Cycas rumphii. Each tissue represented a mixture of developmental stages. Total RNA was isolated using the Plant RNA Purification Reagent (Invitrogen) and submitted to Illumina (Hayward, CA, http://www.illumina.com) for small RNA library construction using approaches described in (Lu et al., 2007) with minor modifications. The small RNA libraries were sequenced with the Sequencing-By-Synthesis (SBS) technology by Illumina. PERL scripts were designed to remove the adapter sequences and determine the abundance of each distinct small RNA. We thank Eric Brenner for providing the plant material and Kan Nobuta and Gayathri Mahalingam for assistance with the computational methods..

Repositories


GEO

GSE28961

ArrayExpress

E-GEOD-28961

BioProject

PRJNA142849

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Contact


Emanuele De Paoli