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Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 4
Release date: Nov 24 2008
Last update date: Mar 20 2012
Access: Public
Chemicals: Nucleotides
Taxon: Oryza sativa
Dataset link Characterization of unique small RNA populations from rice grain

Experimental Protocol


In an attempt to gain a broader understanding of gene expression in rice grain, we characterized small RNA populations from Oryza sativa spp. japonica cv. Nipponbare utilizing a deep sequencing approach. Small RNA libraries were constructed from three pools of mature, dormant rice grain and three-week post germination seedlings utilizing RNA-adapter mediated ligation. Each of the four libraries were independently sequenced using high-throughput pyrosequencing. We obtained a total of 679,146 sequences from the three rice grain libraries and 257,394 from one rice seedling library.

Repositories


GEO

GSE13152

ArrayExpress

E-GEOD-13152

BioProject

PRJNA109733

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