Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 4
Release date: Jun 1 2014
Last update date: Sep 9 2014
Access: Public
Diseases: Neoplasms, Carcinoma, Embryonal, Seminoma
Dataset link Seminoma and embryonal carcinoma footprints identified by analysis of integrated genome-wide epigenetic and expression profiles of germ cell cancer cell lines (ChIP-seq data).

Experimental Protocol


Two wildtype germ cell cancer (type II germ cell tumor) cell lines were analyzed. TCam-2 (representative for the seminomatous subtype of germ cell cancer) , [1, 2]) and NCCIT (representative of the non-seminomatous (embryonal carcinoma) subtype of germ cell cancer, [3]). Of each cell line two biological replicates were included. Genomic positions reported are based on the GRch37/hg19 assembly. 1. Mizuno, Y., et al., [Establishment and characterization of a new human testicular germ cell tumor cell line (TCam-2)]. Nihon Hinyokika Gakkai Zasshi, 1993. 84(7): p. 1211-8. 2. de Jong, J., et al., Further characterization of the first seminoma cell line TCam-2. Genes Chromosomes Cancer, 2008. 47(3): p. 185-96. 3. Teshima, S., et al., Four new human germ cell tumor cell lines. Lab Invest, 1988. 59(3): p. 328-36.

Repositories


GEO

GSE56450

ArrayExpress

E-GEOD-56450

ENA

SRP040804

BioProject

PRJNA243362

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Contact


Martin Rijlaarsdam
Martin Anne Rijlaarsdam

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