Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 22
Release date: Mar 9 2017
Last update date: Oct 18 2018
Access: Public
Mutations: c|SUB|A||G
Computational protocol: TopHat, Cufflinks, DEXSeq, PHAST, WebLogo
Dataset link N6-methyladenosine Recruits HNRNPG for Alternative Splicing Regulation

Experimental Protocol


Measure the m6A methylated HNRNPG binding sites transcriptome-wide by PAR-CLIP-MeRIP; measure the differential HNRNPG occupancies upon METTL3/METTL14 knockdown by PAR-CLIP; measure RNA abundance and splicing level changes upon HNRNPG, METTL3 and METTL14 knockdown

Repositories


GEO

GSE74085

ENA

SRP064870

BioProject

PRJNA298926

Download


Contact


Tao Pan

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