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2D gel electrophoresis image analysis software tools | MS-based untargeted proteomics

Image analysis of two-dimensional gel electrophoresis is a key step in proteomic workflow for identifying proteins that change under different experimental conditions. Since there are usually large amount of proteins and variations shown in the gel…
MiapeGeIDB
Dataset

MiapeGeIDB

Provides a web-based interface for supporting authors to publish their gel…

Provides a web-based interface for supporting authors to publish their gel electrophoresis experiments according to MIAPE guidelines. MiapeGElDB also performs syntax checks and provides a repository…

digeR
Desktop

digeR

Provides a graphical user interface (GUI) for the visualization of protein…

Provides a graphical user interface (GUI) for the visualization of protein post-translational modification (PTM) changes between different biological states. digeR is an R package for analyzing…

Gel2DE
Desktop

Gel2DE

An application for performing pixel-by-pixel correlation analysis on a set of…

An application for performing pixel-by-pixel correlation analysis on a set of gel images from two-dimensional gel electrophoresis and a set of clinical parameters for a population.

Plasmo2D
Desktop

Plasmo2D

Performs gel alignment and protein identification computationally. Plasmo2D…

Performs gel alignment and protein identification computationally. Plasmo2D assists in the identification of proteins in the P. falciparum 3D7 proteome from the 2-DE gel image. It allows users to…

SDA
Desktop

SDA Statistical DIGE Analyzer

A package for the statistical analysis of data from two-dimensional difference…

A package for the statistical analysis of data from two-dimensional difference gel electrophoresis (DIGE). The SDA comprises the following features: (i) simultaneous differential analyses of…

HUVEC
Dataset

HUVEC Human Umbilical Vein Endothelial Cells

Purposes the proteomic analysis of the most explored present endothelial cell…

Purposes the proteomic analysis of the most explored present endothelial cell model, i.e. primocultures of human umbilical vein endothelial cells (HUVEC). The data on HUVEC proteomics are depicted in…

Flicker
Desktop

Flicker

An open-source stand-alone computer program for visually comparing 2D gel…

An open-source stand-alone computer program for visually comparing 2D gel images.

PDQuest 2-D
Desktop

PDQuest 2-D

Allows 2-D gel electrophoresis analysis. PDQuest 2-D is an analysis software…

Allows 2-D gel electrophoresis analysis. PDQuest 2-D is an analysis software available in basic or advanced version. The software PDQuest controls the imaging systems, collects and manages large…

BioNumerics
Desktop

BioNumerics

A fully featured application for complete analysis and databasing of…

A fully featured application for complete analysis and databasing of two-dimensional gels.

ImageMaster 2D
Desktop

ImageMaster 2D

Offers a flexible interface for the comprehensive visualization, exploration,…

Offers a flexible interface for the comprehensive visualization, exploration, and analysis of 2-D gel data from both 2-D DIGE and non-DIGE technologies.

Melanie
Desktop

Melanie

Provides a flexible interface to visualize, explore and analyze 2D…

Provides a flexible interface to visualize, explore and analyze 2D electrophoresis gel images, in order to identify protein markers of interest through differential expression analysis.

RegStatGel
Desktop

RegStatGel

Open-source software with graphical user interface for differential analysis of…

Open-source software with graphical user interface for differential analysis of 2D gel images.

Delta2D
Desktop

Delta2D

Combines fast visual analysis, reliable spot matching and quantitation as well…

Combines fast visual analysis, reliable spot matching and quantitation as well as versatile tools for sorting, filtering and annotating spot data in one easy to learn application.

SameSpots
Desktop

SameSpots

Analyses 2D gel images using an alignment based approach which is proven to…

Analyses 2D gel images using an alignment based approach which is proven to generate reproducible results.

DeCyder 2-D
Desktop

DeCyder 2-D

Designed for 2-D fluorescence difference gel electrophoresis (DIGE) analysis.

Designed for 2-D fluorescence difference gel electrophoresis (DIGE) analysis.

PeptIdent
Web

PeptIdent

Generates a fully annotated 2-DE map. PeptIdent creates an annotated 2-D map…

Generates a fully annotated 2-DE map. PeptIdent creates an annotated 2-D map on-line after automated protein identification from peptide obtained by MALDI-TOF MS. The map is a multidimensional…

REDFIN
Desktop

REDFIN

An easy-to-use, high quality software solution for image analysis of 2D…

An easy-to-use, high quality software solution for image analysis of 2D electrophoresis images.

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