Online

Stores and manages proteomics data. 2D-PAGE may be used to publish two-dimensional electrophoretic proteomics data, and also may be accessed by external users who want to compare their own data with those in the databases. Users can introduce mass spectra into the database, which allows the searching of peptide mass fingerprints against their own protein sequence databases. Currently, the 2D-PAGE proteome database at MPI for Infection Biology is serving as one of the working standards, together with the SWISS-2DPAGE standard, within the European network project on human pathogenic bacteria.

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2D-PAGE classification

2D-PAGE specifications

Restrictions to use:
None
Database management system:
MySQL
Data access:
Web user interface
Programming languages:
Perl
Community driven:
No
User data submission:
Not allowed

Publications

  • (Pleissner et al., 2002) A European pathogenic microorganism proteome database: construction and maintenance. Comp Funct Genomics.
    PMID: 18628887

Credits

Institution(s)

Max Planck Institute for Infection Biology, Core Facility Bioinformatics, Berlin, Germany; Algorithmus, Berlin, Germany; Max Planck Institute for Infection Biology, Core Facility Protein Analysis, Berlin, Germany

Funding source(s)

This work was supported by European Union (EBP: QLRT-1999- 31536) and the combination with PEDANT by BMBF (O31U107A and O31U207A).

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