Computational protocol: Data on genome analysis of Bacillus velezensis LS69

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Protocol publication

[…] The B. velezensis LS69 was isolated from the rice field of Lichuan city of Hubei Province (China) . Whole genome sequencing produced about 1GB clean data using Illumina HiSeq. 2500 platform. A 3,917,761-bp circular chromosome was yielded by sequence assembly and gap closure. The completed genome was annotated by using NCBI Prokaryotic Genomes Automatic Annotation Pipeline (PGAAP) (https://www.ncbi.nlm.nih.gov/genome/annotation_prok/). The annotations data has been deposited in GenBank under the accession number CP015911(https://www.ncbi.nlm.nih.gov/nuccore/CP015911.1?report=gbwithparts&log$=seqview). The genetic islands of B. velezensis LS69 were predicted by submitting the genbank file to the IslandViewer 3 (http://www.pathogenomics.sfu.ca/islandviewer/resources/) . 147 protein coding genes were clustering on the seven genetic islands. […]

Pipeline specifications

Software tools PGAP, IslandViewer
Applications Genome annotation, WGS analysis
Organisms Bacillus amyloliquefaciens