Dataset features

Specifications


Application: BS-seq analysis
Number of samples: 7
Release date: Feb 10 2017
Last update date: Nov 14 2017
Access: Public
Dataset link DNA methylation profile of triple negative breast cancer-specific genes (MBD-Seq)

Experimental Protocol


Genome wide profiling of 7 Lymph node metastatic triple negative breast tumours was performed using MBDCap-seq. Methylation in these samples was compared to normal breast samples that can be found at GSE58020 (GSM1399530,GSM1399522,GSM1399520,GSM1399524). To account for inter patient and inter-region variation, read counts were normalised to total library size and then divided by read counts in a 100% methylated control sample (see GSE58020 sample GSM1399545).

Repositories


GEO

GSE79163

ENA

SRP071779

BioProject

PRJNA315201

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Contact


Kelly Avery-Kiejda

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