Computational protocol: Pre-S deletions of hepatitis B virus predict recurrence of hepatocellular carcinoma after curative resection

Similar protocols

Protocol publication

[…] HBV genotypes were determined by comparing the sequence of BCP/PC and pre-S regions with a set of standard sequences obtained from GenBank. HBV nucleotide sequences were aligned with the Clustal X software program and the phylogenetic trees were constructed by software MEGA version 4.1 software, as described previously.[,] […]

Pipeline specifications

Software tools Clustal W, MEGA
Application Phylogenetics
Organisms Homo sapiens
Diseases Hepatitis B, Carcinoma, Hepatocellular, Infection, Neoplasms
Chemicals Amino Acids