2L-piRNA protocols

View 2L-piRNA computational protocol

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2L-piRNA specifications

Information


Unique identifier OMICS_20438
Name 2L-piRNA
Interface Web user interface
Restrictions to use None
Input data Some sequences.
Input format Some sequences.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Kuo-Chen Chou <>
  • person_outline Bin Liu <>

Additional information


http://bioinformatics.hitsz.edu.cn/2L-piRNA/readme/

Publication for 2L-piRNA

2L-piRNA in pipeline

2018
PMCID: 5773712
PMID: 29348418
DOI: 10.1038/s41598-018-19491-y

[…] other machine learning classifiers (ann, random forest) have been widely used in the field of bioinformatics, and some predictors have been established based on these classifiers, such as psfm-dbt, 2l-pirna, pse-analysis, protdec-ltr, protdec-ltr2.0, etc. some powerful protein analysis methods have been proposed for the formulation of biological sequences, such as pse-in-one, repdna, based […]


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2L-piRNA in publications

 (2)
PMCID: 5773712
PMID: 29348418
DOI: 10.1038/s41598-018-19491-y

[…] other machine learning classifiers (ann, random forest) have been widely used in the field of bioinformatics, and some predictors have been established based on these classifiers, such as psfm-dbt, 2l-pirna, pse-analysis, protdec-ltr, protdec-ltr2.0, etc. some powerful protein analysis methods have been proposed for the formulation of biological sequences, such as pse-in-one, repdna, based […]

PMCID: 5620272
PMID: 28978132
DOI: 10.18632/oncotarget.19590

[…] or spliced transcripts and do not fit into known classes of small rnas []. many computational methods and tools have been proposed and widely used for predicting and analyzing ncrnas, such as 2l-pirna, reprna/repdna, pse-in-one [–]., increasing evidence suggests that mirnas and lncrnas play crucial roles in a variety of biological processes, such as the proliferation, development […]


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2L-piRNA institution(s)
School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China; Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China; Gordon Life Science Institute, Belmont, MA, USA; Center for Informational Biology, University of Electronic Science and Technology of China, China; Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia
2L-piRNA funding source(s)
Supported by the National Natural Science Foundation of China (grant No. 61672184), the Natural Science Foundation of Guangdong Province (grant No. 2014A030313695), Guangdong Natural Science Funds for Distinguished Young Scholars (grant No. 2016A030306008), and Scientific Research Foundation in Shenzhen (grant No. JCYJ20150626110425228).

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