Dataset features

Specifications


Application: RNA-seq analysis, BS-seq analysis
Number of samples: 14
Release date: May 19 2014
Last update date: Oct 24 2018
Access: Public
Diseases: Hypoxia, Neuroblastoma
Dataset link TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma

Experimental Protocol


5-hmC distribution was analyzed from cells exposed to hypoxia (1% O2) or normoxia (20% O2); mRNA was sequenced in parallel for expression analysis. RNA-seq was done using NBL-WN cells, hMe-SEAL experiment was done using NBL-WN cells and SK-N-BE(2) cells

Repositories


GEO

GSE55391

ArrayExpress

E-GEOD-55391

ENA

SRP038987

BioProject

PRJNA239458

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Contact


Christopher Mariani

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