Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 17
Release date: Oct 1 2013
Last update date: Oct 2 2013
Access: Public
Diseases: Kidney Diseases, Thrombosis, Renal Insufficiency
Dataset link Transcriptome characterization of venous endothelium during the formation of neointimal hyperplasia and stenosis in a rat arteriovenous fistula model for kidney dialysis

Experimental Protocol


AVF surgery was performed on N=6 rats, and 13-14 days after surgery the rats were sacrificed. AVFs were extracted from the rats, and microarray transcriptome analyses were performed on luminal endothelial cells that isolated from four different sites of the AVF by employing Laser Capture Microdissection (LCM). These sites included (i) N=5 AVF sections of the superficial epigastric vein (SEV) with neointimal hyperplasia (NIH), (ii) N=3 AVF sections of SEV side branches with luminal stenosis, (iii), N=6 sections of the SEV located distally from a ligation thereby omitting exposure to arterialized flow and consequently preventing the development of NIH or stenosis, and (iv) N=3 sections of the AVF common femoral artery without signs of NIH or stenosis.

Repositories


GEO

GSE46126

ArrayExpress

E-GEOD-46126

BioProject

PRJNA197335

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Contact


Oscar Volger
Oscar L Volger