Computational protocol: West Nile alternative open reading frame (N-NS4B/WARF4) is produced in infected West Nile Virus (WNV) cells and induces humoral response in WNV infected individuals

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Protocol publication

[…] 384 full genomes of WNV were retrived from gene bank and aligned with BioNumerics software package (version 6.5 Applied-Maths, Belgium). Genomes were further analized by KnotInFrame software (http://bibiserv.techfak.uni-bielefeld.de/knotinframe/) to predict ribosomal −1 frameshift sites with a pseudoknot strucuture. […]

Pipeline specifications

Software tools BioNumerics, KnotInFrame
Application RNA structure analysis
Organisms West Nile virus, Equus caballus
Diseases Infection, HIV Infections