Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 12
Release date: Jul 25 2016
Last update date: Dec 21 2017
Access: Public
Chemicals: Oxygen
Computational protocol: Trimmomatic, FastQC, TopHat, Cufflinks, TransDecoder, Pvclust, VENNY, DESeq2, SAMtools, BLASTN, Trinity, CFX Manager
Dataset link The biocontrol agent Pseudomonas chlororaphis PA23 primes Brassica napus defenses through distinct gene regulatory networks

Experimental Protocol


Mature canola leaf tissue treated with combinations of PA23 or S. sclerotiorum ascospores (3 treatment groups) was compared to a water treated control (all treatments done in triplicate).

Repositories


GEO

GSE84798

ArrayExpress

E-GEOD-84798

ENA

SRP079682

BioProject

PRJNA331148

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Contact


Kelly Duke

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