Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 13
Release date: Jun 11 2012
Last update date: Mar 31 2016
Access: Public
Genes: RDM1, DRD1
Taxon: Arabidopsis thaliana
Dataset link Characterization of small RNA-generating regions targeted by RNA polymerase V in Arabidopsis

Experimental Protocol


The Pol V-dependent, heterochromatic siRNA-generating regions were characterized in the Arabidopsis genome by deep sequencing the small RNA populations of wild-type and Pol V mutant plants. Deep SBS sequencing was used for small RNA profiling of immature inflorescence tissues from RNA polymerase V and RdDM mutants.

Repositories


GEO

GSE36424

ArrayExpress

E-GEOD-36424

ENA

SRP011409

BioProject

PRJNA153225

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Contact


Blake Meyers
Blake C. Meyers

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