Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 35
Release date: Feb 14 2018
Last update date: Oct 29 2018
Access: Public
Diseases: Colorectal Neoplasms, Tumor Lysis Syndrome
Computational protocol: affy, Aroma.affymetrix
Dataset link Gene expression data from colorectal cancers

Experimental Protocol


D133TP53 mRNA expression determined by RT-qPCR was combined with transcript level data from Affymetrix Human Exon 1.0 ST arrays for the 35 colorectal tumours. Using Spearman's correlation analyses we identified D133TP53 mRNA was associated with the expression of 364 genes (Spearman’s correlation coefficient r ≥ 0.35). Enrichment of gene sets within the input list was determined using the overrepresentation test with default settings using Bonferroni correction in Pantherdb

Repositories


GEO

GSE106535

BioProject

PRJNA417177

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Contact


Sunali Mehta

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