Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 4
Release date: Feb 26 2011
Last update date: May 15 2018
Access: Public
Taxon: Homo sapiens, Mus musculus
Dataset link RNA polyadenylation landscape in human and mouse cells

Experimental Protocol


We first analyzed HeLa cell transcriptome using PAS-Seq to demonstrate that PAS-Seq not only accurately and comprehensively identifies poly(A) junctions, but also provide quantitative information on the relativel abundance of APA isoforms. Next we analyzed the mouse embryonic stem cells, neural stem/progenitor cells, and neurons by PAS-Seq to characterize the dynamic changes of mRNA polyadenylation during stem cell differentiation.

Repositories


GEO

GSE25450

ArrayExpress

E-GEOD-25450

ENA

SRP005177

BioProject

PRJNA133813

Download


Contact


Peter Shepard