High-throughput chromosome conformation capture data analysis software tools

High-throughput chromosome conformation capture data analysis software tools High-throughput chromosome conformation capture (Hi-C) is a method to identify chromatin interactions across an entire genome. More specifically, it is used to quantify interactions between genomic loci that occur in the 3-D space. In Hi-C analysis, interactions between all possible pairs of fragments are quantified simultaneously. Hi-C analysis software tools include data pre-processing and processing, quantification and data analysis, and annotation and data visualization.

Data preprocessing

Data processing

Data analysis

Annotation

Data visualization

Classification/Clustering

Network analysis

Integrative analysis

Workflows

Utilities

Unclassified tools