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Hi-C data analysis bioinformatics software tools

Hi-C allows unbiased identification of chromatin interactions across an entire genome. Briefly: cells are crosslinked with formaldehyde; DNA is digested with a restriction enzyme that leaves a 5′-overhang; the 5′-overhang is filled, including a biotinylated residue;…

Hi-C analysis steps

Experts in Hi-C analysis

They share and annotate bioinformatics tools

  • Nicolas Servant's avatar image
    Nicolas Servant
    Institut Curie, Paris, France
  • Muhammad Shamim's avatar image Muhammad Shamim's country flag
    Muhammad Shamim
    Baylor College of Medicine

Most recent bioinformatics tools

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3DNetMod
Desktop

3DNetMod

Finds the optimal division of a network into communities. 3DNetMod does not…

Finds the optimal division of a network into communities. 3DNetMod does not require a priori knowledge of the number of communities that will be detected. It is able to recognize nested communities…

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epiTAD
Web

epiTAD

Allows users to compare genomic structures and annotations across multiple…

Allows users to compare genomic structures and annotations across multiple databases and platforms such as HaploReg and RegulomeDB. epiTAD permits researchers to browse and plot various data related…

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Peaky
Desktop

Peaky

Offers a statistical model dedicated to the mapping of physical contacts…

Offers a statistical model dedicated to the mapping of physical contacts between different regions of DNA. Peaky provides an approach based on a Bayesian sparse variable selection that exploits peaks…

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JunctionViewer
Desktop

JunctionViewer

Offers an approach for an automatized gathering of features from complex repeat…

Offers an approach for an automatized gathering of features from complex repeat sequences. JuctionViewer is a standalone software which was initially developed for discovering, filtering, and…

Most popular analytical software and databases

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HOMER
Desktop

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

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HiTC
Desktop

HiTC

Facilitates the exploration of high-throughput 3C-based data. HiTC allows users…

Facilitates the exploration of high-throughput 3C-based data. HiTC allows users to import and export ‘C’ data, to transform, normalize, annotate and visualize interaction maps. It proposes a powerful…

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