Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 9
Release date: Jul 6 2009
Last update date: Jan 25 2018
Access: Public
Diseases: Neurotoxicity Syndromes
Chemicals: Amino Acids, Kainic Acid
Dataset link Gene expression profiles in zebrafish brain after acute exposure to domoic acid at symptomatic and asymptomatic doses

Experimental Protocol


To further understand the mechanisms of neurotoxic injury associated with DA exposure, we examined the transcriptome of whole brains from zebrafish (Danio rerio) receiving intracoelomic (IC) DA at both symptomatic and asymptomatic doses. A majority of zebrafish exposed to high-dose DA (1.2 µg DA/g) exhibited clinical signs of neuroexcitotoxicity (EC50 of 0.86 µg DA/g) within 5 to 20 minutes of IC injection. All zebrafish receiving low-dose DA (0.47 µg DA/g) or vehicle only maintained normal behavior. Microarray analysis of symptomatic and asymptomatic exposures collectively yielded 306 differentially expressed genes (1.5-fold, p = 0.05) predominately represented by signal transduction, ion transport, and transcription factor functional categories. All animal studies were carried out under approved IACUC protocols at the University of Washington.

Repositories


GEO

GSE12140

ArrayExpress

E-GEOD-12140

BioProject

PRJNA113509

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Contact


James MacDonald
Richard Beyer