Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 4
Release date: Apr 2 2009
Last update date: Nov 3 2015
Access: Public
Chemicals: Amino Acids, Calcium, Calcium Chloride, Nucleotides, Zinc
Dataset link Transcriptome analysis of Aspergillus fumigatus delta crzA mutant upon 10 and 30 minutes treatment with CaCl2 (200 mM)

Experimental Protocol


For the time course microarray experiments, 5.0 x 108 conidia of A. fumigatus wild type [CEA17 delta akuB(KU80)] and delta crzA strains were inoculated in 300 ml of pre-warmed liquid cultures (YG) in 500-mL erlenmeyer flasks and allowed to grow for 16 hours in a reciprocal shaker (250 rpm) at 37°C. After this time, the cultures were added by calcium chloride (200 mM) and incubated for 10 and 30 more minutes before mycelia recovery and RNA extraction. Hybridization experiments were competitive using probes derived from calcium chloride shock cultures using the wild type strain exposed to calcium (10 or 30 minutes) as the reference RNA for every hybridizantion. Normalized signal intensities were used to generate relative hybridization ratios (query/reference). Following normalization, the values for each gene's in-slide replicates were averaged (median variance <0.01), and corresponding flip-dye replicates were averaged to compensate for dye-specific effects. These final, processed data are linked below as supplementary files.

Repositories


GEO

GSE15432

ArrayExpress

E-GEOD-15432

BioProject

PRJNA115787

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Contact


Gustavo Goldman
Gustavo Henrique Goldman

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