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ANTs / Advanced Normalization Tools

Computes high-dimensional mappings to capture the statistics of brain structure and function. ANTs allows users to organize, visualize and statistically explore large biomedical image sets. It integrates imaging modalities and related information in space and time, and works across species or organ systems with minimal customization. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute. ANTs can be used paired with ANTsR, an emerging tool supporting standardized multimodality image analysis. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit.

SureFit / Surface Reconstruction by Filtering and Intensity Transformations

Generates surface reconstructions of the cerebral cortex from structural magnetic resonance imaging (MRI) data. SureFit feature options for cortical segmentation, volume visualization and initial surface generation. This software uses a probabilistic method to make shape analysis where multiple lines of evidence about cortical structure are associated to produce a segmentation that runs midway through the thickness of the cortical sheet.