3D-NuS statistics

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3D-NuS specifications

Information


Unique identifier OMICS_20476
Name 3D-NuS
Alternative name 3-Dimensional Nucleic acid Structures
Interface Web user interface
Restrictions to use None
Output data Molecule ID, Three-dimensional structures of the generated nucleic acid molecule, Nucleotide numbering pattern
Output format TAR, PDB
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Thenmalarchelvi Rathinavelan <>
  • person_outline 3D-Nus Team <>

Additional information


http://iith.ac.in/3dnus/Download.pdf

Publication for 3-Dimensional Nucleic acid Structures

3D-NuS in publications

 (4)
PMCID: 5626786
PMID: 28864905
DOI: 10.1007/s10858-017-0127-4

[…] cd79a from b-cell receptor and an sh3 domain from abp1p in exchange between its free form and bound to a peptide from the protein ark1p. we show that, while providing much better resolution, the 3d nus experiments give the similar accuracy and precision of the dynamic parameters to ones obtained using traditional 2d experiments. furthermore, we show that jackknife resampling of the spectra […]

PMCID: 5504159
PMID: 28508110
DOI: 10.1007/s10858-017-0115-8

[…] \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$t_2$$\end{document}t2 domain in 3d spectra. the signal is also processed in a way similar to that known from 3d nus spectra i.e. using one of the most popular compressed sensing algorithms, iterative soft thresholding. the 2d fourier transform matrix is replaced with mixed inverse laplace-fourier transform […]

PMCID: 3929766
PMID: 24435565
DOI: 10.1007/s10858-013-9811-1

[…] in the range of seconds and minutes is challenging and requires fast spectroscopy approaches (bougault et al. ; gal and frydman ; gal et al. ; rennella et al. ). in this work we demonstrate that 3d nus bt-hnco experiment with co-mdd processing can be used for quantification of the hd-exchange rates with half-times from a couple of minutes and larger. a single continuous 3d bt-hnco experiment […]

PMCID: 2923064
PMID: 20512150
DOI: 10.1038/nsmb.1807

[…] equipped with cryogenic and conventional txi probes. the following experiments were recorded: 2d noesy, 2d dqf cosy, 2d [1h,15n]-trosy, 2d 13c-hsqc, 2d 13c-hmqc, 2d 13c-ct-hsqc, 2d 13c-ct-hmqc. 3d nus recorded versions of the trosy experiments hnca, hn(co)ca, hnca(co), hnco, hn(ca)cb, hn(coca)cb. 3d noesy 15n-hmqc, 3d noesy 15n-hsqc, 3d noesy-[1h,15n]-trosy, 4d hnnh hmqc-noesy-hmqc. 3d […]


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3D-NuS institution(s)
Department of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Telangana State, India
3D-NuS funding source(s)
Supported by Department of Biotechnology, Government of India (D.O.No.BT/06/IYBA/2012); BIO-CaRE (SAN.No.102/IFD/SAN/1811/2013-2014); R&D (SAN.No.102/IFD/SAN/3426/2013-2014); Indian Institute of Technology Hyderabad.

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