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3D structure prediction software tools | 5C-seq analysis

5C should be widely applicable to determine the cis and trans connectivity of regulatory elements throughout large genomic regions. In addition, 5C experiments can be designed so that complete interaction maps can be generated for any large genomic…
G T A T C G C T A
ShRec3D
Desktop

ShRec3D

A two-step algorithm and assess its accuracy using both in silico data and…

A two-step algorithm and assess its accuracy using both in silico data and human genome-wide 3C (Hi-C) data. This algorithm avoids convergence issues, accommodates sparse and noisy contact maps, and…

G T A T C G C T A
MCMC5C
Desktop

MCMC5C

A probabilistic model linking 5C/Hi-C data to physical distances and describe a…

A probabilistic model linking 5C/Hi-C data to physical distances and describe a Markov chain Monte Carlo (MCMC) approach to generate a representative sample from the posterior distribution over…

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