3dLOGO specifications


Unique identifier OMICS_09360
Name 3dLOGO
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for 3dLOGO

3dLOGO in publication

PMCID: 3000352
PMID: 21170356
DOI: 10.1371/journal.pcbi.1001029

[…] had the conserved adprt pattern using scanprosite with this regular expression: [yfl]-r-x(27,60)-[yf]-x-s-t-[sqt]-x(32,78)-[qe]-x-e. we formed this pattern strictly using known 3d structures in 3dlogo and changing the resulting regular expression to ensure that it captured known adprt toxins in scanprosite searches. we kept only hits with less than 50% identity to a known toxin […]

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3dLOGO institution(s)
Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy; Bioinformatics Group, I.R.B.M. P. Angeletti, MRL-Rome, Via Pontina Km, Pomezia, Italy; Center for Comparative Functional Genomics, Department of Biology, New York University, NY, USA; Systems Biology Group - Max-Delbrück-Centrum für Molekulare Medizin, Berlin

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