Dataset features

Specifications


Application: ATAC-seq analysis
Number of samples: 24
Release date: Mar 22 2018
Last update date: Nov 29 2018
Access: Public
Dataset link HIV-1 infection of human monocyte-derived dendritic cells with and without the integrase inhibitor, Raltegravir (ATAC-Seq).

Experimental Protocol


DCs were derived from the peripheral blood from three deidentified human donors and infected with a single-cycle HIV-1 reporter virus (HIV-GFP) in the presence of Vpx, with and without Raltegravir. At 0, 16, 32, and 48 hours after infection, live cells were sorted and then prepped for an Assay for Transposase-Accessible Chromatin with high-throughput Sequencing (ATAC-Seq).

Repositories


GEO

GSE100376

ENA

SRP110173

BioProject

PRJNA391485

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