Computational protocol: Nitrosative stress defences of the enterohepatic pathogenic bacterium Helicobacter pullorum

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Protocol publication

[…] Genes encoding homologs of bacterial Hbs and Prxs were searched in the genome of H. pullorum MIT 98-5489 (available at the gene bank, assembly accession GCA_000155495.1, project ABQU00000000.1). Protein-protein BLAST algorithm at NCBI BLAST was used for amino acid sequence similarity studies, and sequence alignments were performed with Clustal ×2.1 and edited with the Genedoc software. […]

Pipeline specifications

Software tools DELTA-BLAST, BLASTN, Clustal W
Applications Protein sequence analysis, Amino acid sequence alignment
Diseases Gastroenteritis, Intestinal Diseases
Chemicals Hydrogen Peroxide, Nitric Oxide, Nitrogen, Peroxynitrous Acid