Computational protocol: Contribution of a Genomic Accessory Region Encoding a Putative Cellobiose Phosphotransferase System to Virulence of Streptococcus pneumoniae

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Protocol publication

[…] In this study, the sequence of the accessory region encoding a putative cellobiose PTS was taken from either Streptococcus pneumoniae Hungary19A-6 (CP000936.1; nucleotides 1784680–1794642) or OXC141 (FQ312027.1; nucleotides 1602906–1612886). BLAST (basic local alignment search tool) analysis was performed through the websites of the National Center for Biotechnology Information (NCBI) and the Transporter Classification Database (TCDB) , . Searches of the Pfam database (version 25.0) were also performed, as well as on the HHpred server , . […]

Pipeline specifications

Software tools BLASTN, HHPred
Databases Pfam TCDB
Application Protein structure analysis
Organisms Mus musculus, Streptococcus pneumoniae, Homo sapiens
Diseases Pneumonia
Chemicals Carbohydrates, Cellobiose