Computational protocol: A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria

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Protocol publication

[…] Multiple sequences alignment was performed using Praline (). The nearest neighbour tree of Ltr proteins were generated using MEGA5 (). The hidden Markov model method SAM-T98 was used for detecting remote protein homologies (). […]

Pipeline specifications

Software tools PRALINE, MEGA, SAM-T98
Application Amino acid sequence alignment