Computational protocol: Genomic Regions Associated with Feed Efficiency Indicator Traits in an Experimental Nellore Cattle Population

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Protocol publication

[…] The chromosome segments that are responsible for more than 1.0% of additive genetic variance were selected to explore and determine possible quantitative trait loci. The bovine genome Map Viewer was used for identification of genes, available at "National Center for Biotechnology Information" (NCBI - http://www.ncbi.nlm.nih.gov) [] in UMD3.1 version bovine genome and Ensembl Genome Browser (http://www.ensemble.org/index.html) []. The classification of genes for biological function, identification of metabolic pathways and enrichment of genes was performed on the website “The Database for Annotation, Visualization and Integrated Discovery (DAVID) v. 6.7” (http://david.abcc.ncifcrf.gov/) [] and GeneCards (http://www.genecards.org/) []. […]

Pipeline specifications

Software tools Map Viewer, DAVID
Databases GeneCards
Application Genome data visualization
Organisms Bos taurus