Dataset features

Specifications


Application: DNA methylation array analysis
Number of samples: 5
Release date: Apr 23 2009
Last update date: May 9 2017
Access: Public
Dataset link Bisulfite Methylation Profiling (BiMP) analysis of met1-3 epigenetic Recombinant Inbred Lines (epiRILs)

Experimental Protocol


Each epiRIL entry consists has three replicates hybridizations, using a single channel, creating 9 samples (9 CEL files) within this series. Per sample, DNA was extracted from a bulk of ten F8 individuals and used per hybridization. Each sample and the corresponding hybridization were independent biological replicates. The hybridizations were scanned and analyzed to detect significant differences betwen epiRILs and the parents. Fully informative comparisons that could clearly identify parental origin were used to create DNA methylation marker epigenomic maps.

Repositories


GEO

GSE13438

BioProject

PRJNA110029

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Contact


Jon Reinders