Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 36
Release date: Feb 28 2011
Last update date: Mar 22 2012
Access: Public
Diseases: Soft Tissue Infections
Chemicals: Methicillin
Dataset link Role of the prophages in the Staphylococcus aureus pathogenesis

Experimental Protocol


Following strains were grown in TSA broth: Staphylococcus aureus USA300 (reference) Staphylococcus aureus USA300 with deletion of ϕSa2usa (Query) Staphylococcus aureus USA300 with deletion of ϕSa3usa (Query) Staphylococcus aureus USA300 Prophage-free mutant (Query) Staphylococcus aureus USA300 Prophage-free mutant lysogenized with ϕSa2mw (Query) Staphylococcus aureus USA300 Prophage-free mutant lysogenized with ϕSa3usa (Query) strain: Staphylococcus aureus USA300 Prophage-free mutant lysogenized with both ϕSa2mw and ϕSa3usa (Query) RNA samples were harvested at early log, midlog and stationary phase.Samples were hybridized on aminosilane coated slides with 70-mer oligos.

Repositories


GEO

GSE26623

ArrayExpress

E-GEOD-26623

BioProject

PRJNA136437

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Contact


Sarah Akkoush