Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 36
Release date: Jan 5 2018
Last update date: Jan 24 2018
Access: Public
Diseases: Intervertebral Disc Degeneration
Chemicals: Carbon, Oxygen
Dataset link Comparing gene expression timing and amplitude to delineate the unique pathways of brown and white rot wood-degrading fungi

Experimental Protocol


We sequenced mRNA from 36 samples, including two brown rot and two white rot fungi, to compare the gene regulations of these two typical wood decay strategies. Each specie was used to colonize wood wafer directionally, a space for time experimental design for study wood decay successions. Then, 3 wood sections on wood wafer were sampled for RNA extraction, representing early to late decay stages, with 3 bioreplicates for each wood section for each specie.

Repositories


GEO

GSE108189

ENA

SRP126935

BioProject

PRJNA422777

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Contact


Jonathan Schilling