Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 32
Release date: Dec 1 2010
Last update date: Feb 22 2018
Access: Public
Diseases: Colonic Neoplasms
Chemicals: Soot
Dataset link Transcriptional responses to nanoparticulate matter in human colon cancer cells.

Experimental Protocol


Two colon cancer cell types (RKO and CaCo-2) were pretreated with 100 ng/ml BSA or TNFα for 1 hr, the media was exchanged and with media containing the nanoparticulate, and RNA was collected after 4 hrs. Generally, the RNA from 4 independent samples were combined for one sample on the microarray, the exceptions were the TNFα treated controls where 6 independent samples were combined in 2 sets of 3 for the microarray labeling and hybridizations.

Repositories


GEO

GSE14910

ArrayExpress

E-GEOD-14910

BioProject

PRJNA112017

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Contact


Philip Moos
Philip J Moos