Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 4
Release date: Jan 17 2013
Last update date: Oct 29 2018
Access: Public
Diseases: Neoplasms, Colorectal Neoplasms, Tumor Lysis Syndrome
Dataset link Expression data from fibroblasts treated with TGF-Beta

Experimental Protocol


CCD-Co-18 were seeded at 60% confluence and treated with TGF-β1. Gene expression profiles were measured in duplicate using HG-U133 plus 2.0. We used RMA background correction, quantile normalization and RMA summarization (Gautier et al., 2004). A TGF-β response signature was obtained by selecting genes with limma P-value < 0.05 and at least two fold up-regulation in TGF-β treated fibroblasts.

Repositories


GEO

GSE39394

ArrayExpress

E-GEOD-39394

BioProject

PRJNA170772

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Contact


Alexandre CALON