Computational protocol: A large-scale RNA interference screen identifies genes that regulate autophagy at different stages

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Protocol publication

[…] Potential protein-protein interaction was analyzed using the online program STRING v9.1 (http://string-db.org). Bait proteins included (1) proteins that directly participate in the autophagy process and (2) kinases that regulate autophagy. Results were exported as image files and modified using adobe illustrator. Lines between nodes represent potential interactions. Colors denote different assays. Gene ontology analyses were performed using the online program DAVID (https://david.ncifcrf.gov) or GeneCards database. […]

Pipeline specifications

Software tools Adobe Illustrator, DAVID
Databases GeneCards
Applications Miscellaneous, Protein interaction analysis
Organisms Homo sapiens
Diseases Leukemia, Myeloid, Neoplasms