Dataset features

Specifications


Dataset type: Expression profiling by high throughput sequencing
Number of samples: 15
Release date: Jan 28 2019
Last update date: Feb 19 2019
Access: Public
Dataset link Transcriptome profiling of caspase-2 deficient lymphomas from EμMyc and neuroblastomas from Th-MycN mice

Experimental Protocol


We used tumors from EμMyc/Casp2-/- mice (which are more aggressive compared to their EμMyc counterarts) as well as tumors from Th-MycN/Casp2-/- mice (which show delayed tumour onset compared to Th-MycN mice) and compared the transcriptomes to their Casp2 wild type counterpart tumors. Sequencing was carried out with Illumina HiSeq 2000 and used short, single-end reads (1x 50bp flow cells) with 4 samples per lane. This yielded approximately 20-30 million raw reads per sample.

Repositories


GEO

GSE124051

ENA

SRP173808

BioProject

PRJNA510620

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Contact


Loretta Dorstyn