Computational protocol: OsMTP11 is localised at the Golgi and contributes to Mn tolerance

Similar protocols

Protocol publication

[…] OsMTP11 and OsMTP11.1 transmembrane domain (TMD) arrangement was predicted using online helix-prediction programme Phobius (http://phobius.sbc.su.se/). AtMTP11 TMDs prediction was obtained from AramTmConsens on the ARAMEMNON database. The subsequent topologies were visualised according to these predictions using Protter. Percentage identity was calculated using EMBOSS Matcher (EMBL-EBI). Hypothetical tertiary structures were predicted using SwissModel using EcYiiP as a homology template, and were visualised using the PyMOL Molecular Graphics System, Version 1.8 Schrödinger, LLC. […]

Pipeline specifications

Software tools Phobius, Protter, EMBOSS, PyMOL
Application Proteome data visualization
Organisms Oryza sativa, Arabidopsis thaliana, Nicotiana tabacum, Saccharomyces cerevisiae
Chemicals Manganese