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Associated diseases

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4SALE specifications

Information


Unique identifier OMICS_08909
Name 4SALE
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.7
Stability Stable
Maintained Yes

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Publications for 4SALE

4SALE in publications

 (36)
PMCID: 5896966
PMID: 29649303
DOI: 10.1371/journal.pone.0195622

[…] compensatory base changes (cbcs) and hemi-cbcs were identified and compared to p. simulans mc984 (genbank accession number: mf374772) and p. dolorosa 300 (genbank accession number: dq336153) using 4sale [–]., mating experiments to test for reproductive isolation of p. hallegraeffii sp. nov. were carried out during the exponential growth phase between all possible pair-wise combinations […]

PMCID: 5865719
PMID: 29570718
DOI: 10.1371/journal.pone.0193603

[…] nuclear rdna its2 region were described in a previous study []. for detecting compensatory base changes (cbcs), the its2 sequences were aligned on the basis of sequence-structure analysis [] using 4sale [,]., the electronic version of this article in portable document format (pdf) in a work with an issn or isbn will represent a published work according to the international code of nomenclature […]

PMCID: 5656628
PMID: 29070840
DOI: 10.1038/s41598-017-12412-5

[…] this occasionally coincided with the minimum free energy configuration. exported secondary structures in vienna format and the respective nucleotide sequences were aligned and visualized using 4sale version 1.7,, and manually edited through extensive comparative analysis of each position (nucleotide) in sequences from the same clade, between clades and finally between lineages […]

PMCID: 5579096
PMID: 28878981
DOI: 10.1098/rsos.170315

[…] as possible, with the exception of taxa for which no alternative option was available. secondary structure annotation was manually added to all non-annotated sequences using the java-based editor 4sale [], and all sequences were manually aligned to maximize the apparent positional homology of nucleotides. the resulting alignment includes representatives of all families of marine nematodes […]

PMCID: 5548896
PMID: 28790327
DOI: 10.1038/s41598-017-07398-z

[…] the its2 haplotype h1 that is shared between i. cavalcantei and i. marabaensis was found to be the best template. structured sequence alignments were analyzed in the alignment and editing tool 4sale, , which was also used to generate the images of the its2 secondary structures. haplotype assignments were done manually. the its2 sequences that had no ambiguities indicated homozygous plants. […]


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4SALE institution(s)
Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, Würzburg, Germany

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