Computational protocol: Identification and functional characterisation of the promoter of the calcium sensor gene CBL1 from the xerophyte Ammopiptanthus mongolicus

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Protocol publication

[…] DNA sequences were analysed by software DNAMAN, and the promoter elements were analysed by PLACE and PLANTCARE Sequence alignments were created with the program DIALIGN. Differences in GUS activity among treatment groups were tested with analyse of variance (ANOVA) in SPSS 16.0 […]

Pipeline specifications

Software tools DNAMAN, DIAlign
Databases PlantCARE
Application MS-based untargeted metabolomics
Organisms Nicotiana tabacum, Arabidopsis thaliana
Chemicals Calcium