Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 82
Release date: May 23 2018
Last update date: Nov 30 2018
Access: Public
Dataset link ChAHP (Adnp, Chd4, HP1) mediates sequence-specific recruitment of HP1 independent of H3K9 methylation

Experimental Protocol


ChIP-seq, RNA-seq and ATAC-seq experiments were performed in mouse ES cells of isogenic background, each experiment was performed in biological replicates. Please note that each bed file (linked to the Series records) belongs to the following samples; Adnp_peak_positions.bed: ChIPseq for Adnp in wt mES cells rep1-3 [GSM2582357-GSM2582359] HP1g_peaks_wo_Adnp_motif_positions.bed: ChIPseq for HP1g in wt mES cells rep1-3 [GSM2582375-GSM2582377], ChIPseq for HP1g (Cbx3) in Adnp knock-out mES cells rep1-3 [GSM2582389-GSM2582391]

Repositories


GEO

GSE97945

ENA

SRP104194

BioProject

PRJNA383413

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Contact


Fabio Mohn