Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 13
Release date: Mar 1 2018
Last update date: Jun 1 2018
Access: Public
Dataset link CRISPR RNA-dependent binding and cleavage of endogenous RNAs by the Campylobacter jejuni Cas9

Experimental Protocol


Identification of Cas9 binding and cleavage sites in C. jejuni strain NCTC11168. Four total files are included for the PAM-SCANR dataset. Raw reads are available for both biological replicates, both pre- and post-FACS. After extracting the variable PAM region from the reads, enrichment was calculated by comparing the pre-FACS PAM counts to the post-FACS counts. These calculations are presented in the included processed data file.

Repositories


GEO

GSE106849

ENA

SRP124876

BioProject

PRJNA418174

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Contact


Thorsten Bischler