Computational protocol: Hantaviruses in Rodents and Humans, Inner Mongolia Autonomous Region,                    China

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Protocol publication

[…] PHYLIP (version 3.65) (http://evolution.genetics.washington.edu/phylip.html) was used to construct phylogenetic trees by using the neighbor-joining and maximum-likelihood methods, with 1,000 bootstrap replicates. Alignments were prepared with ClustalW version 1.83 (www.ebi.ac.uk/Tools/clustalw2/index.html). Nucleotide identities were calculated by using the DNAStar program (DNASTAR, Madison, WI, USA). Hantavirus sequences used in the study were retrieved from GenBank (www.ncbi.nlm.nih.gov/Genbank) (). […]

Pipeline specifications

Software tools PHYLIP, Clustal W
Application Phylogenetics
Organisms , Rattus norvegicus, , Homo sapiens, Mus musculus, Apodemus agrarius
Diseases Hemorrhagic Fever with Renal Syndrome