Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 3
Release date: Feb 4 2013
Last update date: Aug 14 2018
Access: Public
Taxon: Pseudomonas syringae, Arabidopsis thaliana
Dataset link Small RNA sequencing from Arabidopsis adult leaves and profiling of Arabidopsis transcripts in response to flg22 peptide

Experimental Protocol


DNA methylation is closely related to 24nt sRNAs. This is why we sequenced small RNA population in our study. 5-week-old Col-0 leaf samples (treated with either water or flg22 at 1 ?M concentration for 6 h) and deep sequenced by Fasteris (Geneva) on the Illumina HiSeq 2000 platform.

Repositories


GEO

GSE40044

ArrayExpress

E-GEOD-40044

ENA

SRP014794

BioProject

PRJNA172443

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Contact


Emmanuelle Lastrucci