Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 11
Release date: Jul 30 2012
Last update date: May 23 2013
Access: Public
Chemicals: Amino Acids
Dataset link Plant Y-chromosome degeneration is retarded by haploid purifying selection.

Experimental Protocol


We used a combination of Illumina sequencing of cDNA (RNAseq) and segregation analysis of SNPs identified from RNAseq to identify sex-linked genes in plant Silene latifolia. The experiment involved RNAseq from male and female parents and F1 progeny for two genetic crosses. We submit raw data in fastq format for 11 samples. Four of these samples are single end Solexa reads (a single file per sample) and seven samples were sequenced with paired end Solexa sequencing (two fastq files per sample) - 18 files in total.

Repositories


GEO

GSE30958

ArrayExpress

E-GEOD-30958

ENA

SRP007582

BioProject

PRJNA146235

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