Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 5
Release date: Nov 6 2018
Last update date: Nov 27 2018
Access: Public
Diseases: Mitochondrial Diseases
Genes: NEAT1, ATF2
Taxon: Homo sapiens
Dataset link Genome-wide screening of NEAT1 regulators reveals mito-paraspeckle communication

Experimental Protocol


Examination of differential expressed genes between wild type and NEAT1 KO by poly(A)+ RNA-Seq and identifying RNAs that interact with NEAT1 by NEAT1 CHART (capture hybridization analysis of RNA targets) assays followed by RNA-sequencing (CHART RNA-seq) from HeLa cells.

Repositories


GEO

GSE110775

ENA

SRP133038

BioProject

PRJNA434519

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Contact


Li Yang