Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 31
Release date: Apr 26 2012
Last update date: Dec 28 2015
Access: Public
Taxon: Danio rerio
Dataset link Circadian clock drives novel functions through transcriptional cascade

Experimental Protocol


Total RNA of larval sample was extracted using Trizol (Invitrogen) according to the manufacturer’s instruction. The quantity and quality of the RNA samples were assessed with a NanoDrop ND-1000 spectrometer (NanoDrop Technologies) and an Agilent 2100 bioanalyzer (Agilent). 12 LD RNA samples and 12 DD RNA samples were used for Agilent whole zebrafish 4x44K microarray, which contains 43,603 probes for a whole-genome transcriptional profile. Morpholinos oligonucleotides (MOs) were purchased from Gene Tools. All MOs except standard control were designed to target the start codon region of the genes. MOs were used at the following final doses: clock MO, 2.5 ng; mitfa MO, 9 ng or 13ng (microarray analysis). MOs were pressure-injected into 1- to 2-cell stage embryos at a volume of 1nl using Picospritzer II injectors as previously described (Janik et al. 2000). Each MO sample contained 40 individually treated larvae. Then the sample are collected and microarray are conducted just as before.

Repositories


GEO

GSE37332

ArrayExpress

E-GEOD-37332

BioProject

PRJNA162305

Download


Dataset Statistics

info

Citations per year

Dataset publication