Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 2
Release date: Aug 25 2010
Last update date: Sep 28 2018
Access: Public
Diseases: Colorectal Neoplasms
Chemicals: Fluorouracil
Dataset link Alternative expression analysis by RNA sequencing (comparison of 5-FU sensitive and resistant colorectal cancer cell lines)

Experimental Protocol


Two cell lines, 'MIP101' and 'MIP/5FU' were sequenced by Illumina paired end sequencing. A total of ~263 million paired reads were generated. 80% of these were paired 42-mer reads and the remainder were paired 36-mer reads. See Griffith et al, 2010 in Nature Methods for further details. SRA center name: BCCAGSC

Repositories


GEO

GSE23776

ENA

SRP003404

BioProject

PRJNA130627

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