Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 10
Release date: Aug 3 2011
Last update date: May 23 2013
Access: Public
Diseases: Tumor Virus Infections
Chemicals: Nucleotides
Dataset link Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

Experimental Protocol


11 small RNA libraries from several tissues of melon are included en the raw data. 2 samples from ovary, 2 samples from fruit, 1 sample from healthy cotyledons (Cultivar Tendral), 1 samples from healthy cotyledons (genotype TGR-1551), 1 sample from cotyledons (cultivar Tendral) infected with Watermelon mosaic virus (WMV), 1 sample from cotyledons (cultivar TGR-1551) infected with WMV, 1 sample from cotyledons (cultivar Tendral) infected with Melon necrotic spot virus (MNSV, Malfa5 isolate), 1 sample from cotyledons (cultivar Tendral) infected with MNSV (chimeric virus with Malfa5-264 isolates), 1 library from synthetic RNA oligos. Raw reads were obtained from two independent 454 runs, ~22,000 reads each one, to a total of 447,180 reads

Repositories


GEO

GSE28653

ArrayExpress

E-GEOD-28653

ENA

SRP007213

BioProject

PRJNA138849

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Contact


Daniel Gonzalez-Ibeas

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