Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 37
Release date: Jan 23 2018
Last update date: Nov 27 2018
Access: Public
Taxon: Homo sapiens
Dataset link ROP: Dumpster Diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

Experimental Protocol


19 nasal epithelium RNA-Seq, 9 ashmatic, 10 normal/control. 18 peripheral blood RNA-Seq, 9 ashmatic, 9 normal/control. Please note our analysis identifies the origin of unmapped read, hence Read Origin Protocol, by aligning the unmapped reads to elements that are not on human reference genome. The elements include bacterial and viral genome database as well as immune variable regions, and repeat elements.

Repositories


GEO

GSE109313

ENA

SRP131083

BioProject

PRJNA430406

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Contact


Harry Yang