Computational protocol: Structural Modeling and Analysis of Pregnancy-Associated Glycoprotein-1 of Buffalo (Bubalus bubalis)

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Protocol publication

[…] Secondary protein structure prediction from amino acid sequence was performed with PHRYE and CONSURF server [, ] to predict the location of the conserved sites in buffalo PAG-1 amino acid sequence. The comparative modeling program MODELER 9.9 [] in conjunction with PYMOL [] was done to construct various models of buffalo PAG-1. […]

Pipeline specifications

Software tools ConSurf, PyMOL
Application Protein structure analysis
Organisms Bubalus bubalis